From dobrien at osrhe.edu Wed May 1 13:25:17 2002 From: dobrien at osrhe.edu (O'Brien, Dawn) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] test Message-ID: <4499418E013CC64FB4B56892982850040287CD@ms.osrhe.edu> This is a test. Dawn O'Brien From dobrien at osrhe.edu Wed May 1 13:40:41 2002 From: dobrien at osrhe.edu (O'Brien, Dawn) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] test Message-ID: <4499418E013CC64FB4B56892982850040287CF@ms.osrhe.edu> This is another test. Dawn O'Brien From dobrien at osrhe.edu Wed May 1 13:49:41 2002 From: dobrien at osrhe.edu (O'Brien, Dawn) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] test Message-ID: <4499418E013CC64FB4B56892982850040287D1@ms.osrhe.edu> yet another test. Dawn O'Brien From lborin at osrhe.edu Wed May 1 13:56:03 2002 From: lborin at osrhe.edu (Borin, Lesa) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] test Message-ID: <4499418E013CC64FB4B5689298285004033206@ms.osrhe.edu> This is a test. Lesa K. Jolly-Borin Fiscal Policy Analyst Oklahoma State Regents for Higher Education 655 Research Parkway, Suite 200 Oklahoma City, OK 73101 405.225.9134 - FAX 405.225.9230 lborin@osrhe.edu -------------- next part -------------- An HTML attachment was scrubbed... URL: http://lists.onenet.net/pipermail/okmicroarray/attachments/20020501/af291817/attachment.htm From centolam at omrf.ouhsc.edu Fri May 10 13:49:53 2002 From: centolam at omrf.ouhsc.edu (Michael Centola) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] Help for microarray talk Message-ID: <3CDC1651.1B5E5F@omrf.ouhsc.edu> Welcome okmicroarray listserve members I need your help, I am giving a talk on Tuesday to an NIH grant oversight committee on the state of microarrays in the state. Can you send me lists of pending and active grants, papers, and corporate contracts from your lab that involve microarrays. I'm just going to show gross numbers on the amounts and number of grants and if there are only a few papers I may list them by name. I'm putting the slides together this weekend and I apologize for this late appeal for assistance. Thanks, Mike Centola Director OMRF Microarray core facility From chris-aston at omrf.ouhsc.edu Mon May 20 14:46:26 2002 From: chris-aston at omrf.ouhsc.edu (Chris Aston) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] [Fwd: Monday PM News Headlines from GenomeWeb.com] Message-ID: <3CE95292.8040808@omrf.ouhsc.edu> -------- Original Message -------- Subject: Monday PM News Headlines from GenomeWeb.com Date: Mon, 20 May 2002 14:42:28 -0500 From: emailNews@genomeweb.com To: chris-aston@omrf.ouhsc.edu IBM launches a new on-demand Life Sciences Web Lecture Series for scientists and R&D IT professionals. The convergence of IT and the life sciences is a fast moving field. Review the latest information from IBM on topics that bridge these two technology areas right from your desktop. "Gene Expression Pattern Discovery in Gene Expression Microarrays" is one lecture presented by IBM Research. IBM's Functional Genomics Group evaluates methods to better define the functional relationship between genes. One problem is to identify "patterns" of gene expression that maximally differentiate between cells characterized by a specific phenotype, and control cells. This lecture presents a method for discovering such patterns. Other on-demand lectures in the series examine the critical need for data integration and the creation of a flexible R&D IT infrastructure to help accelerate drug discovery and development. Register for the full web lecture series at http://www.ibm.com/solutions/lifesciences/datae14 ====================================================================== 05/20/2002 Hybridon Granted Patent on Circular Oligonucleotides For Antisense http://www.genomeweb.com/articles/view.asp?Article=2002520124350 05/20/2002 Boston University, Beyond Genomics Form Research Alliance http://www.genomeweb.com/articles/view.asp?Article=2002520121528 05/20/2002 Collins: NHGRI's Future Will Take Shape Next Fall http://www.genomeweb.com/articles/view.asp?Article=200252012107 05/20/2002 Agilent Licenses Callida Genomics' DNA Chip Patents http://www.genomeweb.com/articles/view.asp?Article=2002520105025 05/20/2002 MediGene Licenses Gene Regulation System From Valentis http://www.genomeweb.com/articles/view.asp?Article=2002520105520 05/20/2002 Matritech, Bruker Daltonics To Develop Mass Spec For Cancer Diagnostics http://www.genomeweb.com/articles/view.asp?Article=200252011059 05/20/2002 PROTEOMONITOR SUBSCRIBERS: Analysis of Protein-Protein Interactions in Nature Highlights Biases of Methodologies http://www.genomeweb.com/articles/view.asp?Article=2002520104845 ====================================================================== Give your colleagues the benefit of free email reports from GenomeWeb News. Forward this message right now and have them click on http://www.genomeweb.com/subscribersignup.htm To unsubscribe, click on http://www.genomeweb.com/subscriberupdate.htm. -------------- next part -------------- An HTML attachment was scrubbed... URL: http://lists.onenet.net/pipermail/okmicroarray/attachments/20020520/91b7b58a/attachment.htm From centolam at omrf.ouhsc.edu Mon May 20 23:58:26 2002 From: centolam at omrf.ouhsc.edu (Michael Centola) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] [Fwd: BASE v1.0 is available now] Message-ID: <3CE9D3F2.9060109@omrf.ouhsc.edu> This message was sent out over the UCSF microarray listserve on a free microarray database that can run on a linux platform (see below). Alan Shields (the database manager) at the OMRF microarray facility has recently come to the lab to set up our database system and he begun evaluating the BASE database last week. We are hoping that it could provide a free platform that will allow us to get the expression data on a sever so that it can be accessed by facility users involved in the projects from remote locations. Please contact Alan (MourningBlade@bigfoot.com) if you have any comments on this database of suggestions on database setup, we are just getting started. Mike Centola -------- Original Message -------- Subject: BASE v1.0 is available now Date: Mon, 20 May 2002 17:18:46 +0200 From: Lao Saal Reply-To: "To share info regarding GeneChips tech. and Microarrays in general" To: GENE-ARRAYS@ITSSRV1.UCSF.EDU Hello list, If anyone is interested, we've publicly released our microarray database and analysis platform called BioArray Software Environment (BASE). It's a server solution that runs under Linux, where users can login from any web browser to load in data and perform analyses. BASE v1.0 is publicly available for free and open source to all academic and commercial entities under the GNU General Public License. To read up more about BASE, and to download it, visit the website http://base.thep.lu.se. Regards, Lao Saal -------------- next part -------------- An HTML attachment was scrubbed... URL: http://lists.onenet.net/pipermail/okmicroarray/attachments/20020520/029d57b2/attachment.htm From dobrien at osrhe.edu Tue May 21 15:32:07 2002 From: dobrien at osrhe.edu (O'Brien, Dawn) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] TEST Message-ID: <4499418E013CC64FB4B568929828500402887E@ms.osrhe.edu> THIS IS A TEST. PLEASE DO NOT RESPOND. From centolam at omrf.ouhsc.edu Sun May 26 23:47:44 2002 From: centolam at omrf.ouhsc.edu (Michael Centola) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] [Fwd: RE: [Fwd: FW: GENOMICS / PROTEOMICS / BIOINFORMATICS DISCUSSION GROUP]] Message-ID: <3CF1BA70.6010302@omrf.ouhsc.edu> > -----Original Message----- > From: Brackett, Daniel J. > Sent: Friday, May 24, 2002 11:03 AM > To: Distribution List Moderator - HSC Faculty; Distribution List Moderator - HSC Staff; Distribution List Moderator - HSC Student; Angela Dorman; BRUCE ROE; Doris Kupfer; Henry Neeman; Jim White; JIMMY BALLARD; O Rear, Edgar A, III; Thomas Ray; TYRRELL CONWAY; YUHONG TANG; BRENDA SMITH; OSU BRIN GROUP; GLEN COLLIER > Subject: GENOMICS / PROTEOMICS / BIOINFORMATICS DISCUSSION GROUP > > > > Dear Colleagues > > The Genomics / Proteomics / Bioinformatics discussion group series sponsored by the Department of Microbiology & Immunology and the Department of Surgery and serving as a forum for BRIN participants will be held on Wednesday, May 29 at 2:00 pm. The meeting will in the auditorium of the Biomedical Research Center. . > > The topic for discussion this month presented by Dr. Darren Smalley will be "Temporal Regulation of the Hydrogen Peroxide Stress Response in Escherichia coli". This session will be moderated by Dr. Darrin Akins. > > For further information call Darrin Akins at 46640 or me at 2108. > > Looking forward to seeing you there. > > > Daniel J. Brackett Darrin Akins > Professor & Director of Research Assistant Professor > Department of Surgery Department of Microbiology & Immunology > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: http://lists.onenet.net/pipermail/okmicroarray/attachments/20020526/b93be4c1/attachment.htm From centolam at omrf.ouhsc.edu Wed May 29 00:49:28 2002 From: centolam at omrf.ouhsc.edu (Michael Centola) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] Will the new genisphere 50 kit work with oligo slides? References: <3D043DFF@webmail.mcgill.ca> Message-ID: <3CF46BE8.5040101@omrf.ouhsc.edu> If anyone has tried using the new Genisphere Array 50 labeling kit on home made long oligo slides can you share your experiences with me. We are printing Operon Human and Mouse ver 2 libraries onto Corning GAP2 slides and are considering taking a chance and trying Genisphere out for a second time. We had tried out a microkit nearly 8 months ago and it didn't go well. I've heard they've improved the system since that time, but I've not heard if the improved systems works with oligos? Mike Centola From liulin at cvm.okstate.edu Wed May 29 12:15:41 2002 From: liulin at cvm.okstate.edu (Lin Liu/phsi/Cvm) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] Re: Okmicroarray digest, Vol 1 #6 - 1 msg Message-ID: We have tried FluoSpheres fluorescent microspheres (Molecular Probes) on our home-made rat oligo slides. It did not go well. I assume that this is similar to genisphere (although I am not sure about it). Lin Liu okmicroarray-request@lists .onenet.net To: okmicroarray@lists.onenet.net Sent by: cc: (bcc: Lin Liu/phsi/Cvm) okmicroarray-admin@lists.o Subject: Okmicroarray digest, Vol 1 #6 - 1 msg nenet.net 05/29/02 12:01 PM Please respond to okmicroarray Send Okmicroarray mailing list submissions to okmicroarray@lists.onenet.net To subscribe or unsubscribe via the World Wide Web, visit http://lists.onenet.net/mailman/listinfo/okmicroarray or, via email, send a message with subject or body 'help' to okmicroarray-request@lists.onenet.net You can reach the person managing the list at okmicroarray-admin@lists.onenet.net When replying, please edit your Subject line so it is more specific than "Re: Contents of Okmicroarray digest..." The Oklahoma Microarray Question and Answer Forum Today's Topics: 1. Will the new genisphere 50 kit work with oligo slides? (Michael Centola) --__--__-- Message: 1 Date: Tue, 28 May 2002 23:49:28 -0600 From: Michael Centola To: "To share info regarding GeneChips tech. and Microarrays in general" , okmicroarray@lists.onenet.net Subject: [Okmicroarray] Will the new genisphere 50 kit work with oligo slides? If anyone has tried using the new Genisphere Array 50 labeling kit on home made long oligo slides can you share your experiences with me. We are printing Operon Human and Mouse ver 2 libraries onto Corning GAP2 slides and are considering taking a chance and trying Genisphere out for a second time. We had tried out a microkit nearly 8 months ago and it didn't go well. I've heard they've improved the system since that time, but I've not heard if the improved systems works with oligos? Mike Centola --__--__-- _______________________________________________ Okmicroarray mailing list Okmicroarray@lists.onenet.net http://lists.onenet.net/mailman/listinfo/okmicroarray End of Okmicroarray Digest From kjc8 at duke.edu Thu May 30 13:51:36 2002 From: kjc8 at duke.edu (kjc8@duke.edu) Date: Tue Mar 23 20:25:27 2004 Subject: [Okmicroarray] Formamide? Message-ID: <560880292.1022763096@PCAL04> Has anyone ever used Formamide to lower the Tm of RNA/ssDNA strands? I am thinking about trying it, but I dont know if it is successful or not. No use in wasting money... even if it isn't my money! Later, Centola's Prodigy From willy.valdivia at ndsu.nodak.edu Thu May 30 14:50:40 2002 From: willy.valdivia at ndsu.nodak.edu (Willy Valdivia Granda) Date: Tue Mar 23 20:25:28 2004 Subject: [Okmicroarray] second virtual conference Message-ID: ***Second Virtual Conference on Genomics and Bioinformatics*** Sharing Knowledge with the World September 24-26, 2002 The "Virtual Conference on Genomics and Bioinformatics" is an advanced environment for the exchange and discussion of information related to innovations of the post-genomic era. Since genomic research has led to an explosive rate of data accumulation and to a shift in the way biological research is conducted, the conference features high profile researchers and educators working actively in the development of new applications in the areas of genomics and bioinformatics. While genomic technologies offer an enormous scientific potential to understand genome functions, structure and interaction, the increasing amount of data generated present new challenges for biologists, sociologists, mathematicians, computer scientists and biological modelers. Therefore the main goals of the Virtual Conference in Genomics and Bioinformatics are: 1) Transcend geographical and economical barriers to the exchange of ideas that facilitates the interaction and collaboration among scientists and educators around the world. 2) Address the benefits and limitations of the newest developments in post-genomic technologies. 3) Explore the social and ethical implications of genomic and bioinformatic research 4) Establish new ways to introduce high school community about today's multidisciplinary science. . Topics of the Virtual Conference includes but not limited to: ? Structural and Functional Genomics ? Post-Genomic Data Standardization, Management, and Integration ? Statistical and Computational Approaches for Gene Expression Analysis ? Sequence Anotation ? Metabolic Profiling and Simulation of Cellular Processes ? Social and Ethical Implications of Genomic Research ? High Throughput Computing and Distributed Memory Infrastructures Ways to Participate: 1) Fargo Acess Grid Location. 2) Other Acess Grid Locations around the world (to be determined soon). 3) Real Player Live Streaming at selected locations around the world (to be determined soon). The Access Grid creates an environment that allows participants to feel as if they are engaged personally rather than in the stiff structured environment of a typical videoconference. The Access Grid nodes are typically housed in small rooms; however the Fargo Access Grid will seat about 300 people. Most of the other nodes will remain in the smaller rooms. About 20 Access Grid nodes (world-wide) will participate in this second conference. Participants at all Acess Grid Locations can ask questions directly to the speakers. About ten of the speakers will present from the Fargo Access Grid location and the remaining from other Access Grid Locations. Tutorials including: strategies for microarray data analysis, micorarray normalization techniques and use of different slide surfaces for printing microarrays are also planned at the Fargo Access Grid Location. The Real Player Live version will be hosted in locations where an Access Grid is not available. This is a real time communication medium that connects participants in multiple physical locations, utilizing both their visual image and audio. Participants at all Real Player Locations can ask questions to the speaker via a "chat session" and the question or comment will be read to the speaker from the Fargo Acess Grid Location. We invite you to organize small to medium size groups to participate in the conference together via this media. If you are interested in hosting such a group please contact us The URL will be provided to the organiser of these groups prior to the conference. Registration and Fees: Although registration is required, there are no required registration fees to participate in the conference. To attend at the Fargo Access Grid Location please register using this form Registration procedures for the other Access Grid Locations and Real Player Locations will be available soon. To recieve further information on these registration procedures please susbscribe to our mailing list Abstract and Papers: In addition to the invited presentations, we invite you to consider additional participation by sumitting your research advances. Abstracts and papers should describe unpublished research that is not under review. Abstracts describing novel applications and theoretical contributions are also requested. This is a fully refereed meeting and each submitted abstract will be peer-reviewed. Selected abstracts will be invited for full paper review. Please submit your abstract of no more than 250 words by June 30, 2002 through our web page Electronic Paper Session: Accepted papers will be published in the "Proceedings of the Virtual Conferences on Genomics and Bioinformatics". To allow the maximum participation between the attendees and the authors, accepted papers, as well as documents submitted by invited speakers, will be available in an electronic forum discussion format. Deadline: June 30, 2002 for abstracts Deadline: August 15, 2002 for complete documents Speakers List http://www.ndsu.nodak.edu/virtual-genomics/program.htm Review Committee List http://www.ndsu.nodak.edu/virtual-genomics/reviewpanel.htm Willy Valdivia Granda Plant Stress Genomics and Bioinformatics Group North Dakota State University PO BOX 5130 Fargo, USA 701 231-8440 (Lab) 701 231 8255 (Fax) www.ndsu.edu/virtual-genomics